Yes, it is possible to run Monolix using a simple command line:
- with the standalone version of Monolix
monolixSuiteInstallationFolder/bin/Monolix.sh [–nowin] -p fullPathProjectName -f [run|saem|fim|ll|graphics]
(replace .sh into .bat for windows operating system)
- with the Matlab version of Monolix (the command has to be launched from the matlab directory of the installation of Monolix , i.e. /matlab)
matlab -wait -nosplash -nodesktop -r "monolix(’-nowin’, ’-p’, ’fullpathProjectname’,’-f’,’[run|saem|fim|ll|graphics]’, ’-destroy’ ),exit"
Notice that the project name should be defined using a full path and not a partial path.
The program options are
- -nowin : without opening a window, mandatory in no-desktop environments.
- -p : project to run. It should be the full path name of the project
- -f run|saem|indivfim|ll|graphics to run a task
- -f run: run the workflow defined in the project file.
- -f saem: estimate population parameter.
- -f indiv: estimation of the individual parameters
- -f fim: estimate the standard errors of the estimates and Fisher information matrix.
- -f LL: estimate the log-likelihood.
- -f graphics: generate the result graphics.
- To run several tasks, you just have to set them successively, e.g. -f saem -f LL
